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Annotation Data

The following Ensembl and GENCODE versions corresponding to the indicated reference genomes will be made available on the cluster.

Database Version Reference Genome
Ensembl 65 NCBIM37 (Ensembl release corresponding to GENCODE M1)
Ensembl 67 NCBIM37 (Ensembl release for sanger mouse genome assembly)
Ensembl 68 GRCm38 (Ensembl release for sanger mouse genome assembly)
Ensembl 74 GRCh37 (Ensembl release for GENCODE 19)
Ensembl 75 GRCh37 (Latest release for GRCh37)
Ensembl 79 GRCh38 (Ensembl release for GENCODE 22)
Ensembl 80 GRCh38 (Ensembl release corresponding to GENCODE 22)
Ensembl 80 GRCm38 (Ensembl release corresponding to GENCODE M1)
GENCODE M1 NCBIM37 (No gff3 file)
GENCODE M5 GRCm38
GENCODE 19 current for GRCh37
GENCODE 22 current for GRCh38

The annotation files associated with the indicated genomes can be accessed in the following directories:

static_data/annotation
├── ENSEMBL
│   ├── 65
│   │   └── NCBIM37
│   ├── 67
│   │   └── NCBIM37
│   ├── 68
│   │   └── GRCm38
│   ├── 74
│   │   └── GRCh37
│   ├── 75
│   │   └── GRCh37
│   ├── 79
│   │   └── GRCh38
│   └── 80
│       ├── GRCh38
│       └── GRCm38
└── GENCODE
    ├── 19
    │   └── GRCh37
    ├── 22
    │   └── GRCh38
    ├── M1
    │   └── NCBIM37
    └── M5
        └── GRCm38

Last update: January 6, 2022