swibrid documentation

SWIBRID (SWItch joint Breakpoint Repertoire IDentification) is a computational pipeline to analyze long-read sequencing data of switch joints occurring during class switch recombination.

Contents:

• quick start guide
  • installation
  • testing
  • running your own data
• configuration
• understanding output
  • read plot
  • breakpoint histogram
  • QC plot
  • output features
  • demultiplexing
  • other output
• command-line interface
  • swibrid